Package: ouch 2.20-0

ouch: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

Authors:Aaron A. King [aut, cre], Marguerite A. Butler [ctb]

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ouch/json (API)
NEWS

# Install 'ouch' in R:
install.packages('ouch', repos = c('https://kingaa.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kingaa/ouch/issues

Datasets:
  • anolis.ssd - Greater Antillean anolis lizard sexual size dimorphism data
  • bimac - Anolis bimaculatus lizard size data
  • geospiza - Data on Darwin's finches

On CRAN:

adaptive-regimebrownian-motionornstein-uhlenbeckornstein-uhlenbeck-modelsouchphylogenetic-comparative-hypothesesphylogenetic-comparative-methodsphylogenetic-datareact

6.87 score 15 stars 4 packages 68 scripts 642 downloads 2 mentions 14 exports 1 dependencies

Last updated 2 months agofrom:7d83540f26. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-win-x86_64OKNov 03 2024
R-4.5-linux-x86_64OKNov 03 2024
R-4.4-win-x86_64OKNov 03 2024
R-4.4-mac-x86_64OKNov 03 2024
R-4.4-mac-aarch64OKNov 03 2024
R-4.3-win-x86_64OKNov 03 2024
R-4.3-mac-x86_64OKNov 03 2024
R-4.3-mac-aarch64OKNov 03 2024

Exports:ape2ouchbootstrapbrowncoefhansenlogLikouchtreepaintplotprintshowsimulatesummaryupdate

Dependencies:subplex

Readme and manuals

Help Manual

Help pageTopics
Ornstein-Uhlenbeck methods for comparative phylogenetic hypothesesouch-package ouch ouch,package
Greater Antillean anolis lizard sexual size dimorphism dataanolis.ssd
Coerce an 'ouch' object to a data frameas.data.frame.browntree as.data.frame.hansentree as.data.frame.ouchtree as_data_frame
Anolis bimaculatus lizard size databimac
Bootstrapping for uncertainty quantificationbootstrap bootstrap,ANY-method bootstrap,browntree-method bootstrap,hansentree-method bootstrap,missing-method
Phylogenetic Brownian motion modelsbrown browntree-class
Model coefficientscoef coef,browntree-method coef,hansentree-method
Data on Darwin's finchesgeospiza
Ornstein-Uhlenbeck models of trait evolutionhansen hansentree-class
Log likelihood of a fitted modellogLik logLik,browntree-method logLik,hansentree-method
Phylogenetic tree object in 'ouch' formatape2ouch ouchtree ouchtree-class
Painting regimes on a phylogenetic treepaint
'ouch' plotting functionsplot plot,hansentree-method plot,ouchtree-method
Simulations of a phylogenetic trait modelsimulate simulate,browntree-method simulate,hansentree-method
Summary methodssummary summary,browntree-method summary,hansentree-method
Update and refit an 'ouch' modelupdate update,browntree-method update,hansentree-method