Package: ouch 2.20-0

ouch: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

Authors:Aaron A. King [aut, cre], Marguerite A. Butler [ctb]

ouch_2.20-0.tar.gz
ouch_2.20-0.zip(r-4.7)ouch_2.20-0.zip(r-4.6)ouch_2.20-0.zip(r-4.5)
ouch_2.20-0.tgz(r-4.6-x86_64)ouch_2.20-0.tgz(r-4.6-arm64)ouch_2.20-0.tgz(r-4.5-x86_64)ouch_2.20-0.tgz(r-4.5-arm64)
ouch_2.20-0.tar.gz(r-4.7-arm64)ouch_2.20-0.tar.gz(r-4.7-x86_64)ouch_2.20-0.tar.gz(r-4.6-arm64)ouch_2.20-0.tar.gz(r-4.6-x86_64)
ouch_2.20-0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ouch/json (API)
NEWS

# Install 'ouch' in R:
install.packages('ouch', repos = c('https://kingaa.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kingaa/ouch/issues

Datasets:
  • anolis.ssd - Greater Antillean anolis lizard sexual size dimorphism data
  • bimac - Anolis bimaculatus lizard size data
  • geospiza - Data on Darwin's finches

On CRAN:

Conda:

adaptive-regimebrownian-motionornstein-uhlenbeckornstein-uhlenbeck-modelsouchphylogenetic-comparative-hypothesesphylogenetic-comparative-methodsphylogenetic-datareact

6.43 score 16 stars 4 packages 70 scripts 429 downloads 2 mentions 14 exports 1 dependencies

Last updated from:a81e0bd40a. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK132
linux-devel-x86_64OK148
source / vignettesOK149
linux-release-arm64OK111
linux-release-x86_64OK123
macos-release-arm64OK95
macos-release-x86_64OK223
macos-oldrel-arm64OK88
macos-oldrel-x86_64OK165
windows-develOK106
windows-releaseOK97
windows-oldrelOK75
wasm-releaseOK89

Exports:ape2ouchbootstrapbrowncoefhansenlogLikouchtreepaintplotprintshowsimulatesummaryupdate

Dependencies:subplex

Readme and manuals

Help Manual

Help pageTopics
Ornstein-Uhlenbeck methods for comparative phylogenetic hypothesesouch-package ouch ouch,package
Greater Antillean anolis lizard sexual size dimorphism dataanolis.ssd
Coerce an 'ouch' object to a data frameas.data.frame.browntree as.data.frame.hansentree as.data.frame.ouchtree as_data_frame
Anolis bimaculatus lizard size databimac
Bootstrapping for uncertainty quantificationbootstrap bootstrap,ANY-method bootstrap,browntree-method bootstrap,hansentree-method bootstrap,missing-method
Phylogenetic Brownian motion modelsbrown browntree-class
Model coefficientscoef coef,browntree-method coef,hansentree-method
Data on Darwin's finchesgeospiza
Ornstein-Uhlenbeck models of trait evolutionhansen hansentree-class
Log likelihood of a fitted modellogLik logLik,browntree-method logLik,hansentree-method
Phylogenetic tree object in 'ouch' formatape2ouch ouchtree ouchtree-class
Painting regimes on a phylogenetic treepaint
'ouch' plotting functionsplot plot,hansentree-method plot,ouchtree-method
Simulations of a phylogenetic trait modelsimulate simulate,browntree-method simulate,hansentree-method
Summary methodssummary summary,browntree-method summary,hansentree-method
Update and refit an 'ouch' modelupdate update,browntree-method update,hansentree-method